R: Protein-protein interaction network in budding yeast

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eva {netdata}

R Documentation

Protein-protein interaction network in budding yeast

Description

Interaction detection methods have led to the discovery of thousands of interactions between proteins, and discerning relevance within large-scale data sets is important to present-day biology. The dataset consists of protein-protein interaction network described and analyzed in and available as an example in the software package - PIN .

PIN class encoding: 1 - T, 2 - M, 3 - U, 4 - C, 5 - F, 6 - P, 7 - G, 8 - D, 9 - O, 10 - E, 11 - R, 12 - B, 13 - A.

yeastS.net X interacts with Y relation, short names. yeastL.net X interacts with Y relation, long labels. yeast.clu PIN class partition of vertices, see encoding. yeast.paj Pajek project file with complete dataset.

Usage

data(eva)

Details

Use data(package="netdata") to get a full list of networks.

Licenses and Citation

If the source of the data set does not specified otherwise, this data set is protected by the Creative Commons License http://creativecommons.org/licenses/by-nc-nd/2.5/.

When publishing results obtained using this data set the original authors should be cited. In addition this package should be cited as:

Mark S. Handcock, David Hunter, Carter T. Butts, Steven M. Goodreau, and Martina Morris. 2003 statnet: An R package for the Statistical Modeling of Social Networks
http://www.csde.washington.edu/statnet
and the source should be cited as:

{Vladimir Batagelj and Andrej Mrvar (2006):} Pajek datasets
http://vlado.fmf.uni-lj.si/pub/networks/data/.

Source

http://vlado.fmf.uni-lj.si/pub/networks/data/bio/Yeast/Yeast.htm

References

See link above.